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Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2005).  Recent Results in Natural Computing. 311. Abstract
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Romero-Campero F. J. (2011).  Looking for small efficient P systems. Fundamenta Informaticae. 110(1-4), 295-308. Abstract
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2002).  Teoría de la Complejidad en Modelos de Computación Celular con Membranas. II+118 pages.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Modelling EGFR signalling network using continuous membrane systems. (G. Plotkin, Ed.).Third International Workshop on Computational Methods in Systems Biology, CMSB 2005 . 118-129.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2006).  P systems, a new computational modelling tool for Systems Biology. Lecture Notes in Computer Science. 4220, 176-197. Abstract
Pérez-Jiménez, M. J. (2010).  La mitosis celular: una sorprendente frontera de la eficiencia. (Fernando Soler-Toscano, H. von Ditmarsch, Francisco J. Salguero, Ed.).Liber amicorum Angel Nepomuceno. 99-108.
Pérez-Jiménez, M. J., & Romero-Jiménez Á. (2004).  Computing Partial Recursive Functions by Transition P Systems. Lecture Notes in Computer Science. 2933, 320-340. Abstract
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Valencia-Cabrera L. (2013).  The relevance of the environment on the efficiency of tissue P systems. (Artiom Alhazov, S. Cojocaru, Marian Gheorghe, Yurii Rogozhin, Ed.).14th International Conference on Membrane Computing. 283-295.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2003).  Complexity Classes in Cellular Computing with Membranes. (Matteo Cavaliere, Carlos Martín-Vide, Gheorghe Paun, Ed.).Brainstorming Week on Membrane Computing. 270-278.
Pérez-Jiménez, M. J. (1992).  Esquemas del Máximo en la Aritmética. 9+2 microfilms.
Pérez-Jiménez, M. J., Graciani-Díaz C., Romero-Jiménez Á., & Sancho-Caparrini F. (2000).  Soluciones moleculares del problema SAT de la Lógica Proposicional. (Ángel Nepomuceno, José F. Quesada, Francisco J. Salguero, Ed.).Primeras Jornadas sobre Lógica y Lenguaje. 243-252.
Pérez-Jiménez, A. J., Pérez-Jiménez M. J., & Sancho-Caparrini F. (2003).  Computing a Partial Mapping by a P System: Design and Verification. (Matteo Cavaliere, Carlos Martín-Vide, Gheorghe Paun, Ed.).First Brainstorming Week on Membrane Computing . 247-260.
Pérez-Jiménez, M. J., Riscos-Núñez A., Romero-Jiménez Á., & Woods D. (2010).  Complexity: membrane division, membrane creation. (Gheorghe Paun, Grzegorz Rozenberg, Arto Salomaa, Ed.).The Oxford Handbook of Membrane Computing. 302-336.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  A study of the robustness of the EGFR signalling cascade using continuous membrane systems. Lecture Notes in Computer Science. 3561, 268-278. Abstract
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2004).  Modelos de computación celular con membranas. Boletín de la Sociedad Española de Matemática Aplicada. 29, 57-88 .
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Solving Knapsack Problems in a Sticker Based Model . Lecture Notes in Computer Science. 2340, 161-171. Abstract
Pérez-Jiménez, M. J., & Yokomori T. (2009).  Membrane Computing schema: A new approach to computation using string insertion. (A. Condon, D. Harel, J. N. Kon, Arto Salomaa, Eric Winfree, Ed.).Algorithmic Bioprocesses. V, 293-309. Abstract
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Membrane computing as production systems. (Mario J. Pérez-Jiménez, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Recent Results in Natural Computing. 167-204.
Pérez-Jiménez, M. J. (2007).  Un marco formal para modelos de computación bio-inspirados. (Ángel Nepomuceno, Francisco J. Salguero, Fernando Soler-Toscano, Ed.).Lógica, Filosofía del Lenguaje y de la Lógica. 241-260.
Pérez-Jiménez, M. J., & Riscos-Núñez A. (2004).  Modelos de Computación Molecular, Celular y Cuántica . 262. Abstract
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2006).  Computationally Hard Problems Addressed Through P Systems. (Gabriel Ciobanu, Gheorghe Paun, Mario J. Pérez-Jiménez, Ed.).Applications of Membrane Computing. 315-346.
Pérez-Jiménez, M. J., & Riscos-Núñez A. (2004).  A linear-time solution for the knapsack problem with active membranes. Lecture Notes in Computer Science. 2933, 250-268. Abstract
Pérez-Jiménez, M. J., Graciani C., Orellana-Martín D., Riscos-Núñez A., Romero-Jiménez Á., & Valencia-Cabrera L. (2017).  Fuzzy Reasoning Spiking Neural P systems revisited: A formalization. Theoretical Computer Science. 701, 216-225.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Computación Celular con Membranas: Un Modelo no Convencional . II+107.
Pérez-Jiménez, M. J. (2010).  Computational Complexity in Membrane Computing. Algebraic Computing, Soft Computing, and Program Verification.