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Paun, G., & Pérez-Jiménez M. J. (2007).  Editorial. Fourth Brainstorming Week on Membrane Computing. Theoretical Computer Science. 372(2-3), 123-124.
Pan, L., & Pérez-Jiménez M. J. (2009).  Efficiency of tissue P systems with cell separation . 7th Brainstorming Week on Membrane Computing. II, 169-196. Abstract
Macías-Ramos, L. F., Pérez-Jiménez M. J., Riscos-Núñez A., Rius-Font M., & Valencia-Cabrera L. (2012).  The efficiency of tissue P systems with cell separation relies on the environment. 13th International Conference on Membrane Computing (CMC13). 277-290.
Macías-Ramos, L. F., Pérez-Jiménez M. J., Riscos-Núñez A., & Rius-Font M. (2013).  The efficiency of tissue P systems with cell separation relies on the environment. (Erzsebet Csuhaj-Varjú, Marian Gheorghe, Grzegorz Rozenberg, Arto Salomaa, György Vaszil, Ed.).Lecture Notes in Computer Science. 7762 (2013), 257-276. Abstract
Gutiérrez-Naranjo, M. A., Pérez-Jiménez M. J., & Riscos-Núñez A. (2004).  An efficient cellular solution for the Partition problem. Second Brainstorming Week on Membrane Computing. 237-246.
Busi, N., Gutiérrez-Naranjo M. A., & Pérez-Jiménez M. J. (2009).  Efficient computation in rational-valued P systems. Mathematical Structures in Computer Science. 19, 1125-1139. Abstract
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2004).  An efficient family of P systems for packing items into bins. Journal of Universal Computer Science. 10(5), 650-670. Abstract
Díaz-Pernil, D., Pérez-Jiménez M. J., & Romero-Jiménez Á. (2009).  Efficient simulation of tissue-like P systems by transition cell-like P systems. Natural Computing. 8(4), 797-806. Abstract
Díaz-Pernil, D., Gutiérrez-Naranjo M. A., Pérez-Jiménez M. J., & Riscos-Núñez A. (2006).  An efficient solution to 3-COL with tissue P systems. Workshop on Membrane Computing and Biologically Inspired Process Calculi. 1-12.
Song, B., Pérez-Jiménez M. J., & Pan L. (2015).  Efficient solutions to hard computational problems by P systems with symport/antiport rules and membrane division. Biosystems. 130, 51-58. Abstract
Song, B., Pérez-Jiménez M. J., & Pan L. (2017).  An efficient time-free solution to QSAT problem using P systems with proteins on membranes. Information and Computation. 2560, 287-299.
Song, B., Pérez-Jiménez M. J., & Pan L. (2016).  An efficient time-free solution to SAT problem by P systems with proteins on membranes. Journal of Computer and System Sciences. 82(6), 1090-1099. Abstract
Cecilia, J. M., Guerrero G. D., García J. M., Martínez-del-Amor M. A., Pérez-Jiménez M. J., & Ujaldón M. (2010).  Enhancing the Simulation of P Systems for the SAT Problem on GPUs. Symposium on Application Accelerators in High Performance Computing. Abstract
[Anonymous] (2018).  Enjoying Natural Computing: Essays Dedicated to Mario de Jesús Pérez-Jiménez on the Occasion of His 70th Birthday. (Carmen Graciani, Agustín Riscos-Núñez, Gheorghe Păun, Grzegorz Rozenberg, Arto Salomaa, Ed.). x+331.
Pérez-Jiménez, M. J. (1992).  Esquemas del Máximo en la Aritmética. 9+2 microfilms.
Cavaliere, M., Freund R., Leistch A., & Paun G. (2005).  Event-related outputs of computations in P systems. (Miguel A. Gutiérrez-Naranjo, Agustín Riscos-Núñez, Francisco J. Romero-Campero, Dragos Sburlan, Ed.).Third Brainstorming Week on Membrane Computing. 107-122.
Cavaliere, M., Freund R., Leistch A., & Paun G. (2006).  Event-related outputs of computations in P systems. Journal of Automata, Languages and Combinatorics. 11(3), 263-278. Abstract
Zhang, G., Gheorghe M., Pan L., & Pérez-Jiménez M. J. (2014).  Evolutionary membrane computing: a comprehensive survey and new results. Information Sciences. 279, 528–551.
García-Quismondo, M., Reed M. J., Chew F. S., Martínez-del-Amor M. A., & Pérez-Jiménez M. J. (2017).  Evolutionary response of a native butterfly to concurrent plant invasions: simulation of population dynamics. Ecological Modelling. 360, 410-424. Abstract
Cao, H., Romero-Campero F. J., Heeb S., Cámara M., & Krasnogor N. (2010).  Evolving Cell Models for Systems and Synthetic Biology. Systems and Synthetic Biology. 4(1), 55-84. Abstract
Cordón-Franco, A., Gutiérrez-Naranjo M. A., Pérez-Jiménez M. J., & Riscos-Núñez A. (2005).  Exploring computation trees associated with P systems. Lecture Notes in Computer Science. 3365, 278-286. Abstract
Peng, H., Wang J., Shi P., Pérez-Jiménez M. J., & Riscos-Núñez A. (2016).  An extended membrane system with active membranes to solve automatic fuzzy clustering problems. International Journal of Neural Systems. 1-11. Abstract
Macías-Ramos, L. F., Pérez-Jiménez M. J., Song T., & Pan L. (2015).  Extending Simulation of Asynchronous Spiking Neural P Systems in P–Lingua. Fundamenta Informaticae. 136(3), 253-267.
Macías-Ramos, L. F., Song T., Pan L., & Pérez-Jiménez M. J. (2014).  Extending SNP Systems Asynchronous Simulation Modes in P-Lingua. Twelfth Brainstorming Week on Membrane Computing (BWMC2014). 261-280.
Martínez-del-Amor, M. A., Doncel-Ramírez A., Orellana-Martín D., & Pérez-Hurtado I. (2020).  Extracting Parallelism in Simulation Algorithms for PDP systems. 18th Brainstorming Week on Membrane Computing (BWMC2020). 79-90.