Manuel García-Quismondo | Research Group on Natural Computing

Ph.D.
Affiliation:
External Fellow (Applied Scientist, Machine Learning Attribution at Amazon LLC)

Full CV
Research interests

Here is a list of my research interests

Contact information

OneThree Biotech
335 Madison Ave
New York, NY, USA, 10017

Phone: +1 917 690 9363
E-mail: mgarciaquismondo 'at' us 'dot' es

Publications

2021

García-Quismondo, M., Hintz W. D., Schuler M. S., & Relyea R. A. (2021). Modeling Diel Vertical Migration with Membrane Computing. Journal of Membrane Computing. 3, 35-50. Abstract

2018

García-Quismondo, M., Graciani C., & Riscos-Núñez A. (2018). Membrane Computing as a Modelling Tool: Looking Back and Forward from Sevilla. (Carmen Graciani, Agustín Riscos-Núñez, Gheorghe Păun, Gregorz Rozenberg, Arto Salomaa, Ed.).Enjoying Natural Computing: Essays Dedicated to Mario de Jesús Pérez-Jiménez on the Occasion of His 70th Birthday. 114-129.

García-Quismondo, M., Nisbet I. C. T., Mostello C. S., & Reed M. J. (2018). Modeling Population Dynamics of Roseate Terns (Sterna dougallii) in the Northwest Atlantic Ocean. Ecological Modelling. 368, 298-311. Abstract

2017

García-Quismondo, M., Reed M. J., Chew F. S., Martínez-del-Amor M. A., & Pérez-Jiménez M. J. (2017). Evolutionary response of a native butterfly to concurrent plant invasions: simulation of population dynamics. Ecological Modelling. 360, 410-424. Abstract

García-Quismondo, M., Levin M., & Lobo-Fernández D. (2017). Modeling regenerative processes with Membrane Computing. Information Sciences. 381, 229–249.

2015

Martínez-del-Amor, M. A., García-Quismondo M., Macías-Ramos L. F., Valencia-Cabrera L., Riscos-Núñez A., & Pérez-Jiménez M. J. (2015). Simulating P Systems on GPU Devices: A Survey. Fundamenta Informaticae. 136(3), 269-284.

2014

Colomer, A. M., García-Quismondo M., Macías-Ramos L. F., Martínez-del-Amor M. A., Pérez-Hurtado I., Pérez-Jiménez M. J., et al. (2014). Membrane System-Based Models for Specifying Dynamical Population Systems. Applications of Membrane Computing in Systems and Synthetic Biology. 7, 97-132. Abstract

García-Quismondo, M., Martínez-del-Amor M. A., & Pérez-Jiménez M. J. (2014). Probabilistic Guarded P Systems, A formal Definition. Twelfth Brainstorming Week on Membrane Computing (BWMC2014). 183-206.

García-Quismondo, M., Martínez-del-Amor M. A., & Pérez-Jiménez M. J. (2014). Probabilistic Guarded P systems, a New Formal Modelling Framework. 15th Conference on Membrane Computing, pre-proceedings. 169-190.

García-Quismondo, M., Martínez-del-Amor M. A., & Pérez-Jiménez M. J. (2014). Probabilistic Guarded P Systems, A New Formal Modelling Framework. Lecture Notes in Computer Science. 8961, 194-214. Abstract

2013

Gheorghe, M., Ipate F., Lefticaru R., Pérez-Jiménez M. J., Turcanu A., Valencia-Cabrera L., et al. (2013). 3-COL problem modelling using simple Kernel P systems. International Journal of Computer Mathematics. 90(4), 816-830. Abstract

Valencia-Cabrera, L., García-Quismondo M., Pérez-Jiménez M. J., Su Y., Yu H., & Pan L. (2013). Modeling Logic Gene Networks by Means of Probabilistic Dynamic P Systems. International Journal of Unconventional Computing. 9(5-6), 445-464. Abstract

García-Quismondo, M., Macías-Ramos L. F., & Pérez-Jiménez M. J. (2013). Implementing Enzymatic Numerical P Systems for AI Applications by means of Graphic Processing Units. Beyond Artificial Intelligence: Contemplations, Expectations, Applications. 137-157.

Valencia-Cabrera, L., García-Quismondo M., Pérez-Jiménez M. J., Su Y., Yu H., & Pan L. (2013). Analysing Gene Networks with PDP Systems. Arabidopsis thaliana, a Case Study. Eleventh Brainstorming Week on Membrane Computing (11BWMC). 257-272. Abstract

Gheorghe, M., Ipate F., Dragomir C., Mierla L., Valencia-Cabrera L., García-Quismondo M., et al. (2013). Kernel P Systems - Version I. Eleventh Brainstorming Week on Membrane Computing (11BWMC). 97-124. Abstract

Valencia-Cabrera, L., García-Quismondo M., Macías-Ramos L. F., Martínez-del-Amor M. A., Paun G., & Pérez-Jiménez M. J. (2013). Proceedings of the Eleventh Brainstorming Week on Membrane Computing (11BWMC). Eleventh Brainstorming Week on Membrane Computing (11BWMC). x+272.

Martínez-del-Amor, M. A., Pérez-Hurtado I., García-Quismondo M., Macías-Ramos L. F., Valencia-Cabrera L., Romero-Jiménez Á., et al. (2013). DCBA: Simulating population dynamics P systems with proportional objects distribution. (Erzsebet Csuhaj-Varjú, Marian Gheorghe, Grzegorz Rozenberg, Arto Salomaa, György Vaszil, Ed.).Lecture Notes in Computer Science. 257-276. Abstract

2012

García-Quismondo, M., Macías-Ramos L. F., Paun G., & Valencia-Cabrera L. (2012). Proceedings of the Tenth Brainstorming Week on Membrane Computing. Tenth Brainstorming Week on Membrane Computing. II, xiv+292.

García-Quismondo, M., Valencia-Cabrera L., Su Y., Pérez-Jiménez M. J., Pan L., & Yu H. (2012). Modeling logic gene networks by means of probabilistic dynamic P systems. (Linqiang Pan, Gheorghe Paun, Tao Song, Ed.).Asian Conference on Membrane Computing. 30-60.

Martínez-del-Amor, M. A., Pérez-Hurtado I., García-Quismondo M., Macías-Ramos L. F., Valencia-Cabrera L., Romero-Jiménez Á., et al. (2012). DCBA: Simulating population dynamics P systems with proportional object distribution. 13th International Conference on Membrane Computing (CMC13). 291-310. Abstract

Martínez-del-Amor, M. A., Pérez-Hurtado I., García-Quismondo M., Macías-Ramos L. F., Valencia-Cabrera L., Romero-Jiménez Á., et al. (2012). DCBA: Simulating Population Dynamics P Systems with Proportional Object Distribution. Tenth Brainstorming Week on Membrane Computing. II, 27-56. Abstract

García-Quismondo, M., Pavel A. B., & Pérez-Jiménez M. J. (2012). Simulating large-scale ENPS models by means of GPU. Tenth Brainstorming Week on Membrane Computing. I, 137-152. Abstract

Macías-Ramos, L. F., Pérez-Hurtado I., García-Quismondo M., Valencia-Cabrera L., Pérez-Jiménez M. J., & Riscos-Núñez A. (2012). A P-Lingua based simulator for Spiking Neural P systems. Lecture Notes in Computer Science. 7184, 257-281. Abstract

2011

García-Quismondo, M., Macías-Ramos L. F., & Pérez-Jiménez M. J. (2011). Implementing ENPS by means of GPUs for AI applications. Interdisciplinary Aspects of Artificial Intelligence. 27-33. Abstract

Macías-Ramos, L. F., Pérez-Hurtado I., García-Quismondo M., Valencia-Cabrera L., Pérez-Jiménez M. J., & Riscos-Núñez A. (2011). A P-Lingua based Simulator for Spiking Neural P Systems. Proceedings of the 12th International Conference on Membrane Computing (CMC12). 323-346. Abstract

Additional information

Senior Research Analyst at Icahn School of Medicine at Mount Sinai, Immunology Center, New York, NY, USA, under the mentoring of Assistant Prof. Adeeb Rahman (Feb. 2018 - Today).
Postdoctoral Research Fellowship at Rensselaer Polytechnic Institute, Darrin Fresh Water Institute, Troy, NY, USA, under the mentoring of Prof. Rick Relyea (Feb. 2017 - Feb. 2018).
Smithsonian Fellowship at Smithsonian Institution, Smithsonian Conservation Biology Institute, Washington, DC, USA, under the mentoring of Prof. Robert Fleischer (Mar. 2016 - Feb. 2017).
Post-Doctoral Fellowship at Rutgers University, Department of Ecology, Evolution, and Natural Resources, New Brunswick, NJ, USA, under the mentoring of Prof. Nina Fefferman (Oct. 2015 - Feb. 2016).
Post-Doctoral Fellowship at University of Minnesota, Department of Fisheries, Wildlife and Conservation Biology, St. Paul, MN, USA, under the mentoring of Assistant Prof. Paul Venturelli (Feb. 2014 - Sept. 2015).
Visiting Scholarship at Tufts University, Department of Biology, Medford, MA, USA, under the supervision of Profs. J. Michael Reed and Frances S. Chew (Mar. 2013 - Feb. 2014).
Invited Lecturer Scholarship at Huazhong University of Science and Technology (HUST), Image Processing and Intelligent Control Key Laboratory, Wuhan, China, under the supervision of Prof. Linqiang Pan (Nov. 2011 - Dec. 2011).
Visiting Scholarship at Manchester Metropolitan University (MMU), Novel Computation Group, Manchester, UK, under the supervision of Prof. Martyn Amos (Sept. 2011 - Nov. 2011).
FPU Granted Ph.D. Student at the Research Group on Natural Computing (Jun. 2010 - Feb. 2014)
- Ph.D. Thesis: “Modelling and simulation of real-ife phenomena in Membrane Computing”. Advisors: Prof. Mario de Jesús Pérez-Jiménez and Dr. Miguel A. Martínez-del-Amor, University of Seville.
Certificate of Advanced English (CAE) from the University of Cambridge.
MEng in Logic, Computing and Artificial Intelligence from University of Sevilla (2010 - 2011).
- MEng Thesis: “Modelling a prey-predator system using P systems”. Advisors: Dr. Ignacio Pérez-Hurtado and Dr. Francisco J. Romero-Campero, University of Seville.
Research Intern at the Department of Computer Science and Artificial Intelligence (CCIA) (Sept. 2008 - Sept. 2009)
BEng in Computer Science from University of Sevilla (2007 - 2009).
- BEng Thesis: “Development of a Programming Environment in Eclipse for Membrane Computing”. Advisors: Dr. Ignacio Pérez-Hurtado and Associate Prof. Agustín Riscos-Núñez, University of Seville.
BEng in Electrical and Computer Engineering from University of Sevilla (2003 - 2007).
- BEng Thesis: “Elimination of Forbidden Graphs by using Nauty”. Advisor: Prof. José Ramón Portillo, University of Seville.