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Book Chapter
Blakes, J., Twycross J., Konur S., Romero-Campero F. J., Krasnogor N., & Gheorghe M. (2014).  Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology. Applications of Membrane Computing in Systems and Synthetic Biology. 7, 1-42.
Colomer, A. M., García-Quismondo M., Macías-Ramos L. F., Martínez-del-Amor M. A., Pérez-Hurtado I., Pérez-Jiménez M. J., et al. (2014).  Membrane System-Based Models for Specifying Dynamical Population Systems. Applications of Membrane Computing in Systems and Synthetic Biology. 7, 97-132. Abstract
Books
Alonso-Jiménez, J. A., Borrego-Díaz J., Pérez-Jiménez M. J., & Ruiz-Reina J. L. (1998).   Curso Práctico de Teoría de Conjuntos . XXV+345. Abstract
Blázquez-Gallego, J., & Pérez-Jiménez M. J. (2001).   Vida Artificial: Estudio y Análisis del Programa SWARM . 104.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Computación Celular con Membranas: Un Modelo no Convencional . II+107.
Paun, G., Rozenberg G., & Salomaa A. (2004).  DNA Computing. New Computing Paradigms (Translation in the Simplified Version of the English Version). 354.
Paun, G., Rozenberg G., & Salomaa A. (2005).  Dnk Kompjuter. Novaja Paradigms Vytsislenii. 527.
Pérez-Jiménez, M. J. (1992).  Esquemas del Máximo en la Aritmética. 9+2 microfilms.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2003).  Máquinas moleculares basadas en ADN. Colección de Divulgación Científica. 2, 255. Abstract
Paun, G., Rozenberg G., Salomaa A., & Zandron C. (2003).  Membrane Computing, International Workshop, WMC-CdeA 2002, Curtea de Arges, Romania, August 19-23, 2002, Revised Papers. Lecture Notes in Computer Science. 2597,
Paun, G. (2002).  Membrane Computing. An Introduction. XI+419.
Pérez-Jiménez, M. J. (1988).  Teoría de Clases y Conjuntos. XVIII+582.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2002).  Teoría de la Complejidad en Modelos de Computación Celular con Membranas. II+118 pages.
Conference Contributions
Pérez-Jiménez, M. J. (2019).   Computational complexity theory in Membrane Computing: Seventeen years after. 20th International Conference on Membrane Computing, CMC20. 191-206.
Orellana-Martín, D., Valencia-Cabrera L., Song B., Pan L., & Pérez-Jiménez M. J. (2018).   Narrowing frontiers with evolutional communication rules and cell separation. Sixteenth Brainstorming Week on Membrane Computing (BWMC2018). 139-161.
Gershoni, R., Keinan E., Paun G., Piran R., Ratner T., & Shoshani S. (2008).   Research topics arising from the (planned) P systems . 6th Brainstorming Week on Membrane Computing. 183-192. Abstract
di-Nola, A., Paun G., Pérez-Jiménez M. J., & Rosselló-Llompart F. (2004).  (Imprecise topics about) Handling imprecision in P systems. Brainstorming Workshop on Uncertainty in Membrane Computing. 1-10.
Pérez-Hurtado, I., Orellana-Martín D., Martínez-del-Amor M. A., Valencia-Cabrera L., Riscos-Núñez A., & Pérez-Jiménez M. J. (2019).  11 years of P-Lingua: A backward glance. 20th International Conference on Membrane Computing, CMC20. 451-462.
Paun, G. (2006).  2006 Reseacrh Topics in Membrane Computing. (Carmen Graciani-Díaz, Gheorghe Paun, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Fourth Brainstorming Week on Membrane Computing . II, 235-251.
Martínez-del-Amor, M. A., Macías-Ramos L. F., Valencia-Cabrera L., Riscos-Núñez A., & Pérez-Jiménez M. J. (2014).  Accelerated Simulation of P Systems on the GPU: A Survey. 9th International Conference on Bio-Inspired Computing: Theories and Applications. 472, 308-312.
Murphy, N., & Woods D. (2007).  Active membrane systems without charges and using only symmetric elementary division characterise P. (George Eleftherakis, Petros Kefalas, Gheorghe Paun, Grzegorz Rozenberg, Arto Salomaa, Ed.).8th Workshop on Membrane Computing. 4860, 367-384.
Valencia-Cabrera, L., García-Quismondo M., Pérez-Jiménez M. J., Su Y., Yu H., & Pan L. (2013).  Analysing Gene Networks with PDP Systems. Arabidopsis thaliana, a Case Study. Eleventh Brainstorming Week on Membrane Computing (11BWMC). 257-272. Abstract
Guerrero, G. D., Cecilia J. M., García J. M., Martínez-del-Amor M. A., Pérez-Hurtado I., & Pérez-Jiménez M. J. (2009).  Analysis of P systems simulation on CUDA. XX Jornadas de Paralelismo. 289-294. Abstract
Díaz-Pernil, D., Peña-Cantillana F., & Gutiérrez-Naranjo M. A. (2014).  Antimatter as a Frontier of Tractability in Membrane Computing. Twelfth Brainstorming Week on Membrane Computing (BWMC2014). 155-168.
Orellana-Martín, D., Valencia-Cabrera L., Riscos-Núñez A., & Pérez-Jiménez M. J. (2019).  An apparently innocent problem in Membrane Computing. Seventeenth Brainstorming Week on Membrane Computing,. 127-138.